RNAseq Analysis: Count MatrixWe learned how to quality control, align sequences and generate DEG analysis using the cufflink tool. What if I want to create just a count matrix? In this write-up, I'm going to show you how to make a count matrix. Image credit: Lafzi et al. Tutoria...Oct 6, 2023·3 min read
Sequence Data Quality Control, Part. 2: TrimmomaticUsing Trimmomatic to Clean High Throughput Sequence DataDec 19, 2022·3 min read
FastQC Tips & MultiQCHow to Process Files in Bulk through FastQC: Linux Commands, Bash script, and MultiQCDec 19, 2022·2 min read
Sequence Data Quality Control, Part. 1: FastQCAssessing Sequence Data Quality with FastQCDec 16, 2022·4 min read
High Throughput Sequencing Data Pipeline, Part. 1: Quality ControlGood job! By now you should be able to download FASTA/FASTQ files with ease. The next series of write-ups will be about the high throughput sequence data analysis pipeline and the tools involved. Before we start, let's take a look at the workflow of ...Dec 15, 2022·1 min read
How to Download Multiple FASTA/FASTQ FilesWelcome back! By now you should be able to set up the SRA tool and download at least one FASTA/FASTQ file. As you noticed, if not that's fine, there are multiple files under that one article. So, how can I download multiple files in one go? You are i...Dec 13, 2022·3 min read
How to Download FASTA/FASTQ FilesCongrats! You have survived the dreadful part that most novices struggle at. Pat yourself on the back :) Now let's get down to business. We are going to download biological data from the NCBI database. We will use this, https://www.ncbi.nlm.nih.gov/p...Dec 13, 2022·2 min read
