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We learned how to quality control, align sequences and generate DEG analysis using the cufflink tool. What if I want to create just a count matrix? In...
De Novo Transcriptome Analysis (No Reference Based) · In this article, I will walk you through how to conduct a de novo transcriptome analysis. If you...
Reference Based Transcriptome Analysis (Genome Mapping) · Preliminary Preparation: Before we start, there are a couple of tools (hyperlinked) to...
Reference vs. De novo Transcriptome Assembly · Continuing in our series, the next part I will be discussing is sequence mapping. Referring back to this...
Using Trimmomatic to Clean High Throughput Sequence Data · Now that you have assessed the quality of your sequenced data using FastQC, it's time to...
How to Process Files in Bulk through FastQC: Linux Commands, Bash script, and MultiQC · There are several ways to process multiple FASTQ files through...
