High Throughput Sequence Data Pipeline, Part. 2: Sequence Mapping
Reference vs. De novo Transcriptome Assembly
Dec 30, 20222 min read43
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Articles tagged with #ubuntu
Sequence Data Quality Control, Part. 1: FastQC
Assessing Sequence Data Quality with FastQC
Dec 16, 20224 min read84
How to Download Multiple FASTA/FASTQ Files
Welcome back! By now you should be able to set up the SRA tool and download at least one FASTA/FASTQ file. As you noticed, if not that's fine, there are multiple files under that one article. So, how can I download multiple files in one go? You are i...
Dec 13, 20223 min read58
How to Download FASTA/FASTQ Files
Congrats! You have survived the dreadful part that most novices struggle at. Pat yourself on the back :) Now let's get down to business. We are going to download biological data from the NCBI database. We will use this, https://www.ncbi.nlm.nih.gov/p...
Dec 13, 20222 min read48
How to Setup SRA Toolkit
Before we download any files from NCIB, there are a couple of preliminary setups one should install. Most of these files are going to be downloaded into your ssh server so make sure you have a designated server account to operate on. If you have Win...
Dec 13, 20222 min read89